Calculate derivative of mu_ij with respect to ith entry of gamma
Source:R/mu_d_gamma.R
mu_d_gamma.RdCalculate derivative of mu_ij with respect to ith entry of gamma
Usage
mu_d_gamma(
i,
j,
gammas,
B,
X,
Z,
P,
X_tilde,
Z_tilde,
Z_tilde_gamma_cols,
P_tilde,
gamma_tilde
)Arguments
- i
The sample index (must be in 1, ..., n)
- j
The taxon index (must be in 1, ..., J)
- gammas
Numeric vector of read intensities
- B
Detection efficiency matrix
- X
The efficiency design matrix (n x p)
- Z
The sample design matrix (n x K)
- P
The sample relative abundance matrix (K x J)
- X_tilde
The spurious read efficiency design (K_tilde x p)
- Z_tilde
The spurious read design (n x K_tilde)
- Z_tilde_gamma_cols
Numeric vector containing indexes of columns of Z_tilde to scale by exp(gamma); NULL if no columns to be scaled
- P_tilde
The spurious source relative abundance matrix (K_tilde x J)
- gamma_tilde
Spurious read intensity parameter