Reference

Estimate and do inference on absolute abundance The core top-level function in paramedic.
run_paramedic()	Run a Stan algorithm to estimate concentrations from combined absolute and relative abundance data
Print and summarize paramedic objects Print and summary methods for objects of class paramedic.
print(<paramedic>)	Print method for paramedic objects
summary.paramedic()	Summary method for paramedic objects
Make predictions on new data Using the posterior distribution from a paramedic fit, make predictions on new data using either a Stan model or R.
predict_paramedic()	Generate predictions based on a paramedic model fit
posterior_predict(<paramedic>)	Draw from the posterior predictive distribution
Process data and set up initial parameter values Internal functions that ensure incoming data is valid and generates initial values to pass to stan
check_entered_data() make_paramedic_tibbles() make_paramedic_stan_data()	Prepare Data for Paramedic
process_data()	Process a dataset, returning observed abolute and relative abundance matrices
Extract estimates Functions to extract point estimates and interval estimates from paramedic runs.
extract_posterior_summaries()	Extract posterior summaries from a hierarchical model fit
gen_wald_interval()	Generate a Wald-type prediction interval for qPCR
gen_quantile_interval()	Generate a Poisson-quantile-based prediction interval for qPCR
Example data Load and describe example datasets
example_16S_data	Example relative abundance data
example_qPCR_data	Example abolute abundance data
simple_example_data	Simulated data from relative and absolute abundance views
Package documentation homepage Landing page for R help
paramedic-package	The 'paramedic' package.