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Function to subset and convert SummarizedExperiment data

Source: R/convert_sumexp.R
convert_sumexp.Rd

Function to subset and convert SummarizedExperiment data

Usage

convert_sumexp(data, select)

Arguments

data

a SummarizedExperiment object

select

Name of OTU or taxa to select, must match taxa name in data

Value

A data.frame object, with elements W as the observed counts, M as the sequencing depth, and the sample data with their original names.